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Galeri
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This file first gives an example of how to create an Epetra_CrsMatrix object, then it details the supported matrices and gives a list of required parameters.
Given an already created Epetra_Map, Galeri can construct an Epetra_CrsMatrix object that has this Map as RowMatrixRowMap(). A simple example is as follows. Let Map be an already created Epetra_Map* object; then, a diagonal matrix with
on the diagonal can be created using the instructions
#include "Galeri_CrsMatrices.h"
using namespace Galeri;
...
string MatrixType = "Diag";
List.set("a", 2.0);
Epetra_CrsMatrix* Matrix = CreateCrsMatrix(MatrixType, Map, List);
More interesting matrices can be easily created. For example, a 2D biharmonic operator can be created like this:
List.set("nx", 10);
List.set("ny", 10);
Epetra_CrsMatrix* Matrix = Galeri.Create("Biharmonic2D", Map, List);
For matrices arising from 2D discretizations on Cartesian grids, it is possible to visualize the computational stencil at a given grid point by using function PrintStencil2D, defined in the Galeri namespace:
#include "Galeri_Utils.h" using namespace Galeri; ... // Matrix is an already created Epetra_CrsMatrix* object // and nx and ny the number of nodes along the X-axis and Y-axis, // respectively. PrintStencil2D(Matrix, nx, ny);
The output is:
2D computational stencil at GID 12 (grid is 5 x 5)
0 0 1 0 0
0 2 -8 2 0
1 -8 20 -8 1
0 2 -8 2 0
0 0 1 0 0
To present the list of supported matrices we adopt the following symbols:
Cartesian2D. The values of nx and ny are still available in the input list;Cartesian3D. The values of nx, ny and nz are still available in the input list;The list of supported matrices is now reported in alphabetical order.
BentPipe2D (MAP2D, PAR): Returns a matrix corresponding to the finite-difference discretization of the problem
diff, and that of conv. The default values are diff=1e-5, conv=1.BigCross2D (MAP2D, PAR): Creates a matrix corresponding to the following stencil:
Laplace2DFourthOrder. A non-default value must be set in the input parameter list before creating the matrix. For example, to specify the value of List.set("ee", 12.0);
Matrix = Galeri.Create("BigCross2D", Map, List);BigStar2D (MAP2D, PAR): Creates a matrix corresponding to the stencil
Biharmonic2D.Biharmonic2D (MAP2D, PAR): Creates a matrix corresponding to the discrete biharmonic operator,
Cauchy (MAP, MATLAB, DENSE, PAR): Creates a particular instance of a Cauchy matrix with elements Cross2D (MAP2D, PAR): Creates a matrix with the same stencil of Laplace2D}, but with arbitrary values. The computational stencil is
The default values are
List.set("a", 4.0);
List.set("b", -1.0);
List.set("c", -1.0);
List.set("d", -1.0);
List.set("e", -1.0);For example, to approximate the 2D Helmhotlz equation
with the standard 5-pt discretization stencil
and
, one can set
List.set("a", 4 - 0.1 * h * h);
List.set("b", -1.0);
List.set("c", -1.0);
List.set("d", -1.0);
List.set("e", -1.0); The factor
can be considered by scaling the input parameters.
Cross3D (MAP3D, PAR): Similar to the Cross2D case. The matrix stencil correspond to that of a 3D Laplace operator on a structured 3D grid. On a given x-y plane, the stencil is as in Laplace2D. The value on the plane below is set using f, the value on the plane above with g.Diag (MAP, PAR): Creates n. The default value is List.set("a", 1.0);Fiedler (MAP, MATLAB, DENSE, PAR): Creates a matrix whose element are Hanowa (MAP, MATLAB, PAR): Creates a matrix whose eigenvalues lie on a vertical line in the complex plane. The matrix has the 2x2 block structure (in MATLAB's notation)
List.set("a", -1.0);
Hilbert (MAP, MATLAB, DENSE, PAR): This is a famous example of a badly conditioned matrix. The elements are defined in MATLAB notation as JordanBlock (MAP, MATLAB, PAR): Creates a Jordan block with eigenvalue lambda. The default value is lambda=0.1;KMS (MAP, MATLAB, DENSE, PAR): Create the rho. The inverse of this matrix is tridiagonal, and the matrix is positive definite if and only if rho=-0.5;Laplace1D (MAP, PAR): Creates the classical tridiagonal matrix with stencil Laplace1DNeumann (MAP, PAR): As for Laplace1D, but with Neumann boundary conditioners. The matrix is singular.Laplace2D (MAP2D, PAR): Creates a matrix corresponding to the stencil of a 2D Laplacian operator on a structured Cartesian grid. The matrix stencil is:
Laplace2DFourthOrder (MAP2D, PAR): Creates a matrix corresponding to the stencil of a 2D Laplacian operator on a structured Cartesian grid. The matrix stencil is:
Laplace3D (MAP3D, PAR): Creates a matrix corresponding to the stencil of a 3D Laplacian operator on a structured Cartesian grid.Lehmer (MAP, MATLAB, DENSE, PAR): Returns a symmetric positive definite matrix, such that
Minij (MAP, MATLAB, DENSE, PAR): Returns the symmetric positive definite matrix defined as Ones (MAP, PAR): Returns a matrix with a=1;Parter (MAP, MATLAB, DENSE, PAR): Creates a matrix Pei (MAP, MATLAB, DENSE, PAR): Creates the matrix
Recirc2D (MAP2D, PAR): Returns a matrix corresponding to the finite-difference discretization of the problem
diff, and that of conv. The default values are diff=1e-5, conv=1.Ris (MAP, MATLAB, PAR): Returns a symmetric Hankel matrix with elements Star2D (MAP2D, PAR): Creates a matrix with the 9-point stencil:
List.set("a", 8.0);
List.set("b", -1.0);
List.set("c", -1.0);
List.set("d", -1.0);
List.set("e", -1.0);
List.set("z1", -1.0);
List.set("z2", -1.0);
List.set("z3", -1.0);
List.set("z4", -1.0);Stretched2D (MAP2D, PAR): Creates a matrix corresponding to the following stencil:
epsilon=0.1;Tridiag (MAP, PAR): Creates a tridiagonal matrix with stencil
List.set("a", 2.0);
List.set("b", -1.0);
List.set("c", -1.0);UniFlow2D (MAP2D, PAR): Returns a matrix corresponding to the finite-difference discretization of the problem
List.set("alpha", .0);
List.set("diff", 1e-5);
List.set("conv", 1.0);