MueLu_UncoupledAggregationFactory_def.hpp

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#ifndef MUELU_UNCOUPLEDAGGREGATIONFACTORY_DEF_HPP_
#define MUELU_UNCOUPLEDAGGREGATIONFACTORY_DEF_HPP_
 
#include <climits>
 
#include <Xpetra_Map.hpp>
#include <Xpetra_Vector.hpp>
#include <Xpetra_MultiVectorFactory.hpp>
#include <Xpetra_VectorFactory.hpp>
 
#include "MueLu_UncoupledAggregationFactory_decl.hpp"
 
#include "MueLu_InterfaceAggregationAlgorithm.hpp"
#include "MueLu_OnePtAggregationAlgorithm.hpp"
#include "MueLu_PreserveDirichletAggregationAlgorithm.hpp"
#include "MueLu_IsolatedNodeAggregationAlgorithm.hpp"
 
#include "MueLu_AggregationPhase1Algorithm.hpp"
#include "MueLu_AggregationPhase2aAlgorithm.hpp"
#include "MueLu_AggregationPhase2bAlgorithm.hpp"
#include "MueLu_AggregationPhase3Algorithm.hpp"
 
#include "MueLu_Level.hpp"
#include "MueLu_GraphBase.hpp"
#include "MueLu_Aggregates.hpp"
#include "MueLu_MasterList.hpp"
#include "MueLu_Monitor.hpp"
#include "MueLu_AmalgamationInfo.hpp"
#include "MueLu_Utilities.hpp"
 
namespace MueLu {
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  UncoupledAggregationFactory<LocalOrdinal, GlobalOrdinal, Node>::UncoupledAggregationFactory()
  : bDefinitionPhase_(true)
  { }
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  RCP<const ParameterList> UncoupledAggregationFactory<LocalOrdinal, GlobalOrdinal, Node>::GetValidParameterList() const {
    RCP<ParameterList> validParamList = rcp(new ParameterList());
 
    // Aggregation parameters (used in aggregation algorithms)
    // TODO introduce local member function for each aggregation algorithm such that each aggregation algorithm can define its own parameters
 
    typedef Teuchos::StringToIntegralParameterEntryValidator<int> validatorType;
#define SET_VALID_ENTRY(name) validParamList->setEntry(name, MasterList::getEntry(name))
    SET_VALID_ENTRY("aggregation: max agg size");
    SET_VALID_ENTRY("aggregation: min agg size");
    SET_VALID_ENTRY("aggregation: max selected neighbors");
    SET_VALID_ENTRY("aggregation: ordering");
    validParamList->getEntry("aggregation: ordering").setValidator(
      rcp(new validatorType(Teuchos::tuple<std::string>("natural", "graph", "random"), "aggregation: ordering")));
    SET_VALID_ENTRY("aggregation: enable phase 1");
    SET_VALID_ENTRY("aggregation: enable phase 2a");
    SET_VALID_ENTRY("aggregation: enable phase 2b");
    SET_VALID_ENTRY("aggregation: enable phase 3");
    SET_VALID_ENTRY("aggregation: phase2a include root");
    SET_VALID_ENTRY("aggregation: phase2a agg factor");
    SET_VALID_ENTRY("aggregation: preserve Dirichlet points");
    SET_VALID_ENTRY("aggregation: allow user-specified singletons");
    SET_VALID_ENTRY("aggregation: use interface aggregation");
    SET_VALID_ENTRY("aggregation: error on nodes with no on-rank neighbors");
    SET_VALID_ENTRY("aggregation: phase3 avoid singletons");
    SET_VALID_ENTRY("aggregation: compute aggregate qualities");
#undef  SET_VALID_ENTRY
 
    // general variables needed in AggregationFactory
    validParamList->set< RCP<const FactoryBase> >("Graph",       null, "Generating factory of the graph");
    validParamList->set< RCP<const FactoryBase> >("DofsPerNode", null, "Generating factory for variable \'DofsPerNode\', usually the same as for \'Graph\'");
    validParamList->set< RCP<const FactoryBase> >("AggregateQualities", null, "Generating factory for variable \'AggregateQualities\'");
 
    // special variables necessary for OnePtAggregationAlgorithm
    validParamList->set< std::string >           ("OnePt aggregate map name",         "", "Name of input map for single node aggregates. (default='')");
    validParamList->set< std::string >           ("OnePt aggregate map factory",      "", "Generating factory of (DOF) map for single node aggregates.");
    //validParamList->set< RCP<const FactoryBase> >("OnePt aggregate map factory",    NoFactory::getRCP(), "Generating factory of (DOF) map for single node aggregates.");
 
    // InterfaceAggregation parameters
    //validParamList->set< bool >                  ("aggregation: use interface aggregation", "false", "Flag to trigger aggregation along an interface using specified aggregate seeds.");
    validParamList->set< std::string >           ("Interface aggregate map name",                "", "Name of input map for interface aggregates. (default='')");
    validParamList->set< std::string >           ("Interface aggregate map factory",             "", "Generating factory of (DOF) map for interface aggregates.");
    validParamList->set<RCP<const FactoryBase> > ("nodeOnInterface", Teuchos::null, "Array specifying whether or not a node is on the interface (1 or 0).");
 
    return validParamList;
  }
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  void UncoupledAggregationFactory<LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level& currentLevel) const {
    Input(currentLevel, "Graph");
    Input(currentLevel, "DofsPerNode");
 
    const ParameterList& pL = GetParameterList();
 
    // request special data necessary for OnePtAggregationAlgorithm
    std::string mapOnePtName = pL.get<std::string>("OnePt aggregate map name");
    if (mapOnePtName.length() > 0) {
      std::string mapOnePtFactName = pL.get<std::string>("OnePt aggregate map factory");
      if (mapOnePtFactName == "" || mapOnePtFactName == "NoFactory") {
        currentLevel.DeclareInput(mapOnePtName, NoFactory::get());
      } else {
        RCP<const FactoryBase> mapOnePtFact = GetFactory(mapOnePtFactName);
        currentLevel.DeclareInput(mapOnePtName, mapOnePtFact.get());
      }
    }
 
    // request special data necessary for InterfaceAggregation  
    if (pL.get<bool>("aggregation: use interface aggregation")       == true){   
      if(currentLevel.GetLevelID() == 0) {
        if(currentLevel.IsAvailable("nodeOnInterface", NoFactory::get())) {
          currentLevel.DeclareInput("nodeOnInterface", NoFactory::get(), this);
        } else {
          TEUCHOS_TEST_FOR_EXCEPTION(currentLevel.IsAvailable("nodeOnInterface", NoFactory::get()),
                                       Exceptions::RuntimeError,
                                       "nodeOnInterface was not provided by the user on level0!");
        }
      } else {
        Input(currentLevel, "nodeOnInterface");
      }
    }
 
    if (pL.get<bool>("aggregation: compute aggregate qualities")) {
  Input(currentLevel, "AggregateQualities");
    }
  }
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  void UncoupledAggregationFactory<LocalOrdinal, GlobalOrdinal, Node>::Build(Level &currentLevel) const {
    FactoryMonitor m(*this, "Build", currentLevel);
 
    ParameterList pL = GetParameterList();
    bDefinitionPhase_ = false;  // definition phase is finished, now all aggregation algorithm information is fixed
 
    if (pL.get<int>("aggregation: max agg size") == -1)
      pL.set("aggregation: max agg size", INT_MAX);
 
    // define aggregation algorithms
    RCP<const FactoryBase> graphFact = GetFactory("Graph");
 
    // TODO Can we keep different aggregation algorithms over more Build calls?
    algos_.clear();
    algos_.push_back(rcp(new PreserveDirichletAggregationAlgorithm(graphFact)));
    if (pL.get<bool>("aggregation: use interface aggregation")       == true)   algos_.push_back(rcp(new InterfaceAggregationAlgorithm         (graphFact)));
    if (pL.get<bool>("aggregation: allow user-specified singletons") == true)   algos_.push_back(rcp(new OnePtAggregationAlgorithm             (graphFact)));
    if (pL.get<bool>("aggregation: enable phase 1" )                 == true)   algos_.push_back(rcp(new AggregationPhase1Algorithm            (graphFact)));
    if (pL.get<bool>("aggregation: enable phase 2a")                 == true)   algos_.push_back(rcp(new AggregationPhase2aAlgorithm           (graphFact)));
    if (pL.get<bool>("aggregation: enable phase 2b")                 == true)   algos_.push_back(rcp(new AggregationPhase2bAlgorithm           (graphFact)));
    if (pL.get<bool>("aggregation: enable phase 3" )                 == true)   algos_.push_back(rcp(new AggregationPhase3Algorithm            (graphFact)));
 
      // TODO: remove old aggregation mode
      //if (pL.get<bool>("UseOnePtAggregationAlgorithm")             == true)   algos_.push_back(rcp(new OnePtAggregationAlgorithm             (graphFact)));
      //if (pL.get<bool>("UseUncoupledAggregationAlgorithm")         == true)   algos_.push_back(rcp(new AggregationPhase1Algorithm            (graphFact)));
      //if (pL.get<bool>("UseMaxLinkAggregationAlgorithm")           == true)   algos_.push_back(rcp(new MaxLinkAggregationAlgorithm           (graphFact)));
      //if (pL.get<bool>("UseEmergencyAggregationAlgorithm")         == true)   algos_.push_back(rcp(new EmergencyAggregationAlgorithm         (graphFact)));
 
    std::string mapOnePtName = pL.get<std::string>("OnePt aggregate map name");
    RCP<Map> OnePtMap = Teuchos::null;
    if (mapOnePtName.length()) {
      std::string mapOnePtFactName = pL.get<std::string>("OnePt aggregate map factory");
      if (mapOnePtFactName == "" || mapOnePtFactName == "NoFactory") {
        OnePtMap = currentLevel.Get<RCP<Map> >(mapOnePtName, NoFactory::get());
      } else {
        RCP<const FactoryBase> mapOnePtFact = GetFactory(mapOnePtFactName);
        OnePtMap = currentLevel.Get<RCP<Map> >(mapOnePtName, mapOnePtFact.get());
      }
    }
 
    // Set map for interface aggregates
    std::string mapInterfaceName = pL.get<std::string>("Interface aggregate map name");
    RCP<Map> InterfaceMap = Teuchos::null;
 
    RCP<const GraphBase> graph = Get< RCP<GraphBase> >(currentLevel, "Graph");
 
    // Build
    RCP<Aggregates> aggregates = rcp(new Aggregates(*graph));
    aggregates->setObjectLabel("UC");
 
    const LO numRows = graph->GetNodeNumVertices();
 
    // construct aggStat information
    std::vector<unsigned> aggStat(numRows, READY);
 
    // interface 
    if (pL.get<bool>("aggregation: use interface aggregation")       == true){   
      Teuchos::Array<LO> nodeOnInterface = Get<Array<LO>>(currentLevel,"nodeOnInterface");
      for (LO i = 0; i < numRows; i++) {
        if (nodeOnInterface[i])
          aggStat[i] = INTERFACE;
      }
    }
 
    ArrayRCP<const bool> dirichletBoundaryMap = graph->GetBoundaryNodeMap();
    if (dirichletBoundaryMap != Teuchos::null)
      for (LO i = 0; i < numRows; i++)
        if (dirichletBoundaryMap[i] == true)
          aggStat[i] = BOUNDARY;
 
    LO nDofsPerNode = Get<LO>(currentLevel, "DofsPerNode");
    GO indexBase = graph->GetDomainMap()->getIndexBase();
    if (OnePtMap != Teuchos::null) {
      for (LO i = 0; i < numRows; i++) {
        // reconstruct global row id (FIXME only works for contiguous maps)
        GO grid = (graph->GetDomainMap()->getGlobalElement(i)-indexBase) * nDofsPerNode + indexBase;
 
        for (LO kr = 0; kr < nDofsPerNode; kr++)
          if (OnePtMap->isNodeGlobalElement(grid + kr))
            aggStat[i] = ONEPT;
      }
    }
 
 
 
    const RCP<const Teuchos::Comm<int> > comm = graph->GetComm();
    GO numGlobalRows = 0;
    if (IsPrint(Statistics1))
      MueLu_sumAll(comm, as<GO>(numRows), numGlobalRows);
 
    LO numNonAggregatedNodes = numRows;
    GO numGlobalAggregatedPrev = 0, numGlobalAggsPrev = 0;
    for (size_t a = 0; a < algos_.size(); a++) {
      std::string phase = algos_[a]->description();
      SubFactoryMonitor sfm(*this, "Algo " + phase, currentLevel);
 
      int oldRank = algos_[a]->SetProcRankVerbose(this->GetProcRankVerbose());
      algos_[a]->BuildAggregates(pL, *graph, *aggregates, aggStat, numNonAggregatedNodes);
      algos_[a]->SetProcRankVerbose(oldRank);
 
      if (IsPrint(Statistics1)) {
        GO numLocalAggregated = numRows - numNonAggregatedNodes, numGlobalAggregated = 0;
        GO numLocalAggs       = aggregates->GetNumAggregates(),  numGlobalAggs = 0;
        MueLu_sumAll(comm, numLocalAggregated, numGlobalAggregated);
        MueLu_sumAll(comm, numLocalAggs,       numGlobalAggs);
 
        double aggPercent = 100*as<double>(numGlobalAggregated)/as<double>(numGlobalRows);
        if (aggPercent > 99.99 && aggPercent < 100.00) {
          // Due to round off (for instance, for 140465733/140466897), we could
          // get 100.00% display even if there are some remaining nodes. This
          // is bad from the users point of view. It is much better to change
          // it to display 99.99%.
          aggPercent = 99.99;
        }
        GetOStream(Statistics1) << "  aggregated : " << (numGlobalAggregated - numGlobalAggregatedPrev) << " (phase), " << std::fixed
                                   << std::setprecision(2) << numGlobalAggregated << "/" << numGlobalRows << " [" << aggPercent << "%] (total)\n"
                                   << "  remaining  : " << numGlobalRows - numGlobalAggregated << "\n"
                                   << "  aggregates : " << numGlobalAggs-numGlobalAggsPrev << " (phase), " << numGlobalAggs << " (total)" << std::endl;
        numGlobalAggregatedPrev = numGlobalAggregated;
        numGlobalAggsPrev       = numGlobalAggs;
      }
    }
 
    TEUCHOS_TEST_FOR_EXCEPTION(numNonAggregatedNodes, Exceptions::RuntimeError, "MueLu::UncoupledAggregationFactory::Build: Leftover nodes found! Error!");
 
    aggregates->AggregatesCrossProcessors(false);
    aggregates->ComputeAggregateSizes(true/*forceRecompute*/);
 
    Set(currentLevel, "Aggregates", aggregates);
 
    if (pL.get<bool>("aggregation: compute aggregate qualities")) {
  RCP<Xpetra::MultiVector<double,LO,GO,Node>> aggQualities = Get<RCP<Xpetra::MultiVector<double,LO,GO,Node>>>(currentLevel, "AggregateQualities");
    }
 
    if (IsPrint(Statistics1))
      GetOStream(Statistics1) << aggregates->description() << std::endl;
  }
 
} //namespace MueLu
 
 
#endif /* MUELU_UNCOUPLEDAGGREGATIONFACTORY_DEF_HPP_ */